PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G098600.2
Common NameB456_013G098600, LOC105782938
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 556aa    MW: 59113.3 Da    PI: 5.712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G098600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.3e-09372420355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.013G098600.2 372 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 420
                         58*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17367437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-11367424No hitNo description
PROSITE profilePS5088815.478369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-17370437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6372420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDVGEKDKYE LEKRNDNSLN YQASSMSSAW QFGGSNLTST PMSLVSSDNP LVIGSSSASA  60
SMGDSFCSNL WEHPSNSQNL GFCDINVQNG ASSSNAMGIG RGGPASVRGS IDRPFEMGWN  120
ASSSMLKGGI FLPNASGVLP SSLSQLPTDS AFIERAAKFS SFNGGNFSDI VNPFGIPEAM  180
GVYARGVGLM QGPQDVYTIS GIKSISGVES QRSKLITTEA SRDLPAENRA TQESPLKNER  240
NGGSLVRSNE EAKQGNGGSG NESNEAESSG GAGGHDEPSA LDGTAGESSA KILSSKKRKR  300
SVQEAEVDQA KGSQSPVEAT KDGAENQQKV DQNQTTMVNK TTAKHGKQGS QASDPPKEEY  360
IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ  420
RQVEFLSMKL ATVNPRVDCN IEGLLAKDII QSRAGPSTLG FSPDLSVGYP PLHPSQPGLG  480
PGGFPVMENN ADIIRRTLSS HFTPMTGGFK EPNQLSNAWE DELHNVVQMN YGTSTASDSQ  540
EVNGSQPSGH TKVEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468119e-91EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463500.10.0PREDICTED: transcription factor bHLH49
RefseqXP_012463499.10.0PREDICTED: transcription factor bHLH49
RefseqXP_012463498.10.0PREDICTED: transcription factor bHLH49
RefseqXP_012463497.10.0PREDICTED: transcription factor bHLH49
TrEMBLA0A0D2SBD40.0A0A0D2SBD4_G
STRINGPOPTR_0010s14600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-126bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]